An important bit of this which I think some might be missing is that the Jedi Corps appear different because they obey a body - a highly rutheless, paranoid, and Orwellian body - that will give them orders they will follow, and they will follow these orders above the Force.
We have all heard in the movies and read in the books about the Will of the Force, and the Jedi's wisdom came from divining this will and seeking to enact it for the benefit of all. However, although the Jedi Corps might believe they are supporting their ideals, they use the power of the force while not obeying it. They don't obey it's light or dark side, they don't obey it as a whole, they use it to do what the Empire tells them and nothing more. They take without giving anything back.
The Force, as portrayed by the films and the novels, IS a semi-conscious entity that connects all life, almost on the edge of life itself. The Jedi Corps do not form a symbiotic relation with the Force, as they use without return. They will hurt the Force, and the ramnifications of shattering the Force's power would be great.
I appeal to you all now on two fronts:
1) The writing front, whereby this would be an amazing story that could even be part of the Star Wars main plot, tying in how one Sith's mad ambition spawned an Empire that could possibly - through devotion to his lies - now destroy the Force. This sort of story could be amazingly entertaining and certainly at least plausible.
2) The Star Wars front, because this is the sort of thing that happens in Star Wars, and frankly it appears to me as the sort of thing that would happen if a government (even inadvertently) ended up trying to take control of the Force, weakening it's flow and thus the flow of life.
Lastly, I'd like to say that it could be handled in a way where those who don't want to participate wouldn't have to, where the effects would only be felt by those involved, and that the outcome could be anything so don't be against it just because you fear it might jeprodize your plans or assets. I'd really like to try this, so isn't there some way it can be done? It seems to make so much sense.